Recombinant DNA approaches to enhance the activity of the pathway for the degradation of the toxic pollutant styrene in the bioreactor isolate Pseudomonas putida CA-3: a biotechnologically significant metabolic route.

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Resource or Project Abstract

This project involved targeted genetic manipulation of the bacterial isolate Pseudomonas putida CA-3, in an attempt to enhance its ability to degrade the toxic pollutant styrene to carbon dioxide and water. The styrene degradation pathway has been well-characterised in this strain at both the genetic and physiological level. In addition, this strain has the novel ability to generate polyhydroxyalkanoate (PHA), a bio-degradable polymer, from styrene under appropriate growth conditions. Polyhydroxyalkanoates have been recognised as a potential bio-plastic replacement for current petrochemical plastics. Thus, P. putida CA-3 not only offers a significant styrene remediation capability but also the opportunity to use a toxic waste compound as the starting material for the production of value-added environmentally friendly bio-plastic. This project has focused mainly on the styrene degrading ability of P. putida CA-3, where styrene is degraded via phenylacetic acid, and seeks to develop the biotechnological potential of this strain by applying recombinant DNA strategies in an attempt to enhance the rate of styrene degradation. A considerable amount of data exists on the ability of bacteria to degrade styrene and a number of aspects of the styrene degradation pathway have been targeted in this study. Advanced molecular biology techniques including binding site mutagenesis, tri-parental mating, gene over-expression and random mutagenesis were used to generate recombinant strains that were subsequently monitored for changes in the styrene degradation pathway. When the presence of styrene is detected by the bacterial cell the styrene degradation genes are activated and converted to proteins. These proteins facilitate the initial step-wise degradation of styrene to phenylacetic acid. However, inhibitor compounds, particularly other carbon sources, can block transcription of the styrene pathway genes, thus disrupting degradation, and this could be a significant problem when trying to treat wastes since these are unlikely to consist of pure styrene. Manipulating the genetic information to block the interference from inhibitory compounds is a potential way of maintaining styrene degradation in mixed wastes. The recombinant strains were tested under a range of metabolic conditions and the genetic manipulations performed in this study did not appear to have a significant impact in P. putida CA-3, however further analysis involving mixed substrates is required. The preliminary data suggests that these inhibitor sites may play a limited role in styrene degradation in P. putida CA-3. For bacteria to successfully degrade many compounds they must be transported across the cell membrane into the cell, where they are then degraded by cellular enzymes. Transport of styrene across the bacterial cell membrane presents a limiting factor in the rate of styrene degradation and increasing the number of copies of the transport gene was seen as a potential way of increasing the rate of styrene degradation. Similarly possessing additional copies of the styrene catabolic genes may lead to greater levels of enzyme activity and thus to increased styrene degradation. A number of recombinant strains were generated and analysis suggests that non-styrene controlled expression of the genes and multiple copies are required to significantly increase styrene degradation. In P. putida CA-3 phenylacetic acid is a key intermediate in styrene degradation. Previous investigation of phenylacetic acid breakdown in this strain identified a critical gene involved in phenylacetic acid metabolism which did not share significant similarity with reported phenylacetic acid associated genes. This suggested that novel single copy genes are important for phenylacetic acid degradation in this strain. Further investigation of P. putida CA-3 resulted in the identification of a novel mutant which had lost the ability to grow with phenylacetic acid as a sole carbon source. Additional analysis of the mutant strain revealed a link between the disrupted gene and transport of phenylacetic acid into the cell. This further highlights the critical role that transport systems play in the effective operation of degradation pathways for aromatic compounds.

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Contact Information for This Resource

Dr. Mark O'Mahony
University College Cork
Environmental Research Scientist
Environmental Research Institute, Lee Road, University College Cork, Lee Road Cork City, Ireland
Telephone: +353 (0)21 4901970
e-mail: mark.omahony@ucc.ie

Dr. Niall D. O?Leary
University College Cork
Environmental Scientist
Environmental Research Institute (ERI), University College Cork, Lee Road, Cork, Ireland
Telephone: +353 21 490 1931
e-mail: n.oleary@ucc.ie

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Offline Print Quality Version    STRIVE_65_OMahony_StyreneDegradation_prn.pdf  (2.17 Mb)
Project Report Optimised For Online Viewing    STRIVE_65_OMahony_StyreneDegradation_web.pdf  (1.45 Mb)

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Author(s)O'Mahony, M. O?Leary, D.N.
Title Of WebsiteSecure Archive For Environmental Research Data
Publication InformationRecombinant DNA approaches to enhance the activity of the pathway for the degradation of the toxic pollutant styrene in the bioreactor isolate Pseudomonas putida CA-3: a biotechnologically significant metabolic route.
Name of OrganisationEnvironmental Protection Agency Ireland
Electronic Address or URL http://erc.epa.ie/safer/resource?id=dfe42489-d8e3-102e-a0a4-f81fb11d7d1c
Unique Identifierdfe42489-d8e3-102e-a0a4-f81fb11d7d1c
Date of AccessLast Updated on SAFER: 2017-04-28

An example of this citation in proper usage:

O'Mahony, M. O?Leary, D.N.   "Recombinant DNA approaches to enhance the activity of the pathway for the degradation of the toxic pollutant styrene in the bioreactor isolate Pseudomonas putida CA-3: a biotechnologically significant metabolic route.". Associated datasets and digitial information objects connected to this resource are available at: Secure Archive For Environmental Research Data (SAFER) managed by Environmental Protection Agency Ireland http://erc.epa.ie/safer/resource?id=dfe42489-d8e3-102e-a0a4-f81fb11d7d1c (Last Accessed: 2017-04-28)

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Access Information For This Resource

SAFER-Data Display URL http://erc.epa.ie/safer/iso19115/display?isoID=209
Resource KeywordsStyrene, phenylacetic acid, waste remediation, biodegradation, biotransformation, polyhydroxyalkanoates, bio-plastics, Pseudomonas.
EPA/ERTDI/STRIVE Project Code2007-FS-ET-9-M5
EPA/ERTDI/STRIVE Project ThemeEnvironmental Technologies
Resource Availability: Any User Can Download Files From This Resource
Public-Open
Limitations on the use of this ResourceAny attached datasets, data files, or information objects can be downloaded for further use in scientific applications under the condition that the source is properly quoted and cited in published papers, journals, websites, presentations, books, etc. Before downloading, users must agree to the "Conditions of Download and Access" from SAFER-Data. These appear before download. Users of the data should also communicate with the original authors/owners of this resource if they are uncertain about any aspect of the data or information provided before further usage.
Number of Attached Files (Publicly and Openly Available for Download): 2
Project Start Date Monday 1st October 2007 (01-10-2007)
Earliest Recorded Date within any attached datasets or digital objects Monday 1st October 2007 (01-10-2007)
Most Recent Recorded Date within any attached datasets or digital objects Tuesday 12th April 2011 (12-04-2011)
Published on SAFERThursday 26th May 2011 (26-05-2011)
Date of Last EditThursday 26th May 2011 at 13:42:12 (26-05-2011)
Datasets or Files Updated On Thursday 26th May 2011 at 13:40:15 (26-05-2011)

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Geographical and Spatial Information Related To This Resource

Description of Geographical Characteristics of This Project or Dataset
This was a lab-based project.

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Supplementary Information About This Resource

In this section some supplementary information about this resource is outlined. Lineage information helps us to understand why this project was carried out, what policy or research requirements did it fulfil, etc. Lineage is important in understanding the rationale behind the carrying out of a project or the collection of a specific dataset etc. Links to web sites, applications, papers, etc are outlined to provide you with additional information or supplementary reading about the project or dataset

Lineage information about this project or dataset
The ability of Pseudomonas putida CA-3 to degrade styrene has been extensively studied at both the physiological and genetic level by our group in UCC. In collaboration with a group in UCD the novel ability of this strain to produce polyhydroxyalkanoate, a source of bio-plastics, from styrene has also been investigated. To date approximately 20 peer-reviewed papers have been published on Pseudomonas putida CA-3 and this project further enhanced our knowledge of this strain.
Supplementary Information
Key output ""Regulation of phenylacetic acid uptake is σ54 dependent in Pseudomonas putida CA-3". Pulication submitted to BMC Microbiology and under review."

State of Knowledge report is also available on SAFER http://erc.epa.ie/safer/iso19115/standardDisplayMetadata.jsp?isoID=143

Modelling, scientific approaches:
General Molecular Biology Techniques, Polymerase Chain Reaction, Gene Splicing, Gene Expression Analysis, Random Mutagenesis, Targeted Mutagenesis, Tri-parental Mating, Enzyme Assays, Bioinformatic Analysis.

Source of data: Genetic sequences freely available and downloaded from the National Centre for Biotechnology Information

Genetic sequences were used for comparative analysis with the genetic sequences generated from Pseudomonas puitda CA-3

Bioinformatic analysis software: DNAStar and CLC Sequence Viewer. Output files are opened with Wordpad or are produced as jpeg and/or tiff image files.
Links To Other Related Resources
  http://www.ucc.ie/en/eri (Opens in a new window)
  http://erc.epa.ie/safer/iso19115/standardDisplayMetadata.jsp?isoID=143 (Opens in a new window)

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